NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208542_1043179

Scaffold Ga0208542_1043179


Overview

Basic Information
Taxon OID3300025818 Open in IMG/M
Scaffold IDGa0208542_1043179 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1425
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027780Metagenome / Metatranscriptome193N
F041165Metagenome / Metatranscriptome160N

Sequences

Protein IDFamilyRBSSequence
Ga0208542_10431791F027780N/AVSKNMLSLWAVPIGARTFQKKYNAKQIPHVTLLENLKPEKKAHEFFPTTMNLKAQSTEMVVRKMKDKYEYGWVFEYEGGDLFMTCHEVDKGEIPATDIRKLDEKVLNTVVTYSIDGILVDPSDLDTVWAYDSDEVWF
Ga0208542_10431794F041165N/AMNQALLHRELNGRFKRPHSCFKLALIHALETCEPVDFVRVFKLNRAPADEWIRRRAYPSLERFLDFHSDIEMLSPDWFTFMINATWIMTSLNWIESDEDGASLKLHHEL
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