NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209101_1078509

Scaffold Ga0209101_1078509


Overview

Basic Information
Taxon OID3300025819 Open in IMG/M
Scaffold IDGa0209101_1078509 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer C metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)941
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Microbial Mats → Hot Spring Microbial Mat → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.4127Long. (o)-118.504Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098762Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209101_10785091F098762GGAGMIRIQYPSSVDRVAYPVLSENIDYSAVDGSIRAWYPFTRVQSTAVVYGMGVWRDQFYYVAGDKFYRYPFTQLGVLDSEPQITERAYFVPLSDVLVIIVSGAIYLYDTQNGFRKWTKPSKPTTVPNTERVLFSVNRGTNLGGSATFTDGTNDYTLGDVADGEPGAHRWFGLDLPANPNDRPAWVSEVIFRLNSWQNTISTREHSAVELHSDQTGNNQIARVVLPYPYTMGDHSIV
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