NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210033_1019956

Scaffold Ga0210033_1019956


Overview

Basic Information
Taxon OID3300025826 Open in IMG/M
Scaffold IDGa0210033_1019956 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3389
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001258Metagenome735Y
F001911Metagenome / Metatranscriptome618Y
F044906Metagenome / Metatranscriptome153N
F060596Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0210033_10199562F001911N/AMMKRHTDFEQFKQEYKKDFDIPVLSAKEKDIFIHLFLLLRRKMSEGMFPELMNSEIMFSKSDLKTLVLKGIVIFQNHKKGWIISMNPNYITKNAECSFCGAKFSEMVYFRRNSIRCPGCGIRMHGSTTAKRVNDYSVAITNIEKVEAIPKVTTSVVPIEHVITDVPGFLKITDIVLAPTAMERTIQIANQEVIPFITNRADKLNALSTLKRIENKKKEANARILQDNILANFSPVCIDFLKKYFFIQNHTLFSAMMYINLKLSQISNDPQFIANASLKCNILTEVKNACEMLYENATIRSVTIADK
Ga0210033_10199564F044906N/AMDSNNKKEHTTIQTKTNVANRLKKMLRVGVTYDDIITDLIGYYRATK
Ga0210033_10199565F060596N/AMKNIEAMVGAIPISDENIKKSEVAKKKMAKNRTMVLLDRKVVDRLCCCKTKIGNTYNSVISNLLDEYENKINKDGQ
Ga0210033_10199566F001258N/AMENKEASVGAIPTQEKKQQAEEEGKKYIRKENEVIFCLEEAPEYQISAVARWGENPLGEIMSCPDIYFRHISTGRLCQSVSACLAGVEHDQYAAEKWDTLYYRIRTMLVRDLRRIVCFEKKYEIHPI

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