NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210031_1129164

Scaffold Ga0210031_1129164


Overview

Basic Information
Taxon OID3300025827 Open in IMG/M
Scaffold IDGa0210031_1129164 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG03_land_8/20/14_0.80 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)748
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014357Metagenome / Metatranscriptome263Y
F102522Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0210031_11291641F014357N/AENGKDSKELTFLMYGQPAADVNTATDTQITKKNNPSEFCDFPFRGGVATKRKIDLYGVVYSSRGADDGTTPANCIHTKYLKLMKGRNVLFDSMRMGLPALGNNVQTGGTFSAENGYDIGGEYSDLYQKDALIFDQPIRFANGEELDTYWTTAVAQTPGTFQARELEIAYILKETQE
Ga0210031_11291642F102522N/AMTILFKEFWINVSPNNVKCEANNKLYVQKGQKIILHAIQIAPGVDTTDEDVFIMLYRDQEQLTGEGIY
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