Scaffold Ga0209100_1044528

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209100_1044528

Scaffold Ga0209100_1044528

Overview

Basic Information
Taxon OID	3300025834 Open in IMG/M
Scaffold ID	Ga0209100_1044528 Open in IMG/M
Source Dataset Name	Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - lysozymeSSSS metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1789
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Borup Fiord, Nunavut, Canada
Coordinates	Lat. (^o)	81.017	Long. (^o)	-81.583	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083559	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209100_10445281	F083559	N/A	HTVREFGVEARRPGKAWEAAFNGPIQTWLDAETHERTYGVTVRLSRMKDMFTRELYSTNILFYLAEDDMAGMHNIYDMARTLPFMRIRGPRTPVPYCPPRPGKLWYDANPEGVIMEDVRLAPVTLPDGRAGFFATGQGYRGKVMLPDGLFIHDVGVYGGYLDPDERPGQLELTHLFGGIEFGAQKTGSQEDLFLTELGENIWVKGIVGNVTEEMHVESYKNSVRLPSPLPERTLIGARSMSETKLLPYFGTSDPESLRGYSLRGFIDGLPGAIGSDVWARVVRVGLGSNFVACPEEGGYLGLIHVVLERNEPAHPETLDPSYPKIEEQYEGWMVRLDFDADDRPLFKSCVRAITPNDVPHCYNGLGELFDTKRVAFPISLYRTGDTLAAAYGWGDRALFQAEFDYRDVVRRLAA

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