NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210039_1071160

Scaffold Ga0210039_1071160


Overview

Basic Information
Taxon OID3300025835 Open in IMG/M
Scaffold IDGa0210039_1071160 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG17_big_fil_post_rev_8/21/14_2.50 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1547
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Desantisbacteria → Candidatus Desantisbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_40_23(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002857Metagenome / Metatranscriptome525Y
F017787Metagenome238Y
F068436Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0210039_10711602F017787N/AMEKIIREGEHILGKEKYTLGVRAKFDVNFEYFEILKHSNFNDECVYLSRKFFFLKNIITDDEKKEIEKFENEILDKFYYK
Ga0210039_10711603F068436N/AMENKKESVENAQEKGIVNEILGEIRKKSREHEKRMNLIEAILN
Ga0210039_10711604F002857N/AMENKKRIWGTTQTDEAYDEMIRMEKEKQNSVFKNDEKNDKKEMEASMKFLSDKNFIERISLRDGMKRKFKLVKDEVTEIIGFDGNTKQGITYIVTENEKQKSFFTTSMKCISMLSKFQKDDVFEIELKTKKVGDTLISYHVVKKI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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