NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210039_1158140

Scaffold Ga0210039_1158140


Overview

Basic Information
Taxon OID3300025835 Open in IMG/M
Scaffold IDGa0210039_1158140 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG17_big_fil_post_rev_8/21/14_2.50 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)898
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002298Metagenome / Metatranscriptome573Y
F052376Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0210039_11581401F052376N/AMKKVLKYKNKARKINKNKMKNIEASVGIIHIGEKKEDAGAEKNKVVTNFVCFYLKEDPRFEISAMGLWCENFSGVKVGYVDIYFFPGTARKRYDDMWMSFQRGSEEAEKVEDMWKMLGERIEALENIYEIIRYSKWIGV
Ga0210039_11581402F002298N/AMKKAKASVGAVPTQMEIFKTGILNMTLKKIDNILEKSDDIDRMNFEFYNMVGKTYGPQTIFEQHRTTLKIDAFRRDIGKRWAENMKKREEVYEIIDMIYELSKIETENPDDERSKQTSWAEVRKKIQEKMVKTLSR
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