NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210016_1012551

Scaffold Ga0210016_1012551


Overview

Basic Information
Taxon OID3300025837 Open in IMG/M
Scaffold IDGa0210016_1012551 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG02_land_8/20/14_3.00 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6114
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → environmental samples → uncultured archaeal virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012423Metagenome / Metatranscriptome280Y
F019951Metagenome / Metatranscriptome226N
F044301Metagenome154N
F050143Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0210016_101255110F012423N/AMVLTKYKGDNCELSIGISNDANSTSQNYGLSLCLKDDAGVEYTLWVITVLGTIITGGFSKITDTNKTKKNKFYLEKATTYNYTATIPLPEFETEGKIYGQLGIYDGTDEDSELIAETTYDYVYDYLKKKFSMSISVNWK
Ga0210016_10125512F050143N/AMAKCDWMTEADVKDAMVRGISNAGAAHTFGVNYPRQDPIQSAISAIQKGIWEKNFRDSIGKWEKKLAMITIEEWKAATTAAASMYAEKASTIGAEEWGKYYDKAKSVIESAAAEYVKSDKKKENLIKFWTDMQKLKNL
Ga0210016_10125513F044301N/AMAVTKEMAVGKYKDKISSDKFNKGVSAVTKSPAQQAVAQKDAFAKNTIAGKEVLIKNLSKVSVEEWKAKTIAGFDKLQAKVVRAVETGKWNAAKTLTAGKNAHAAVANMKKGTLNDSYERYLAAQKAVVAVYA
Ga0210016_10125515F019951N/AMTILFKEFRIDVSGNNVKCEANNKLYVQKGQKIILHAIQIAPGTTTADEDVFIMLYRDQEQLAGEGIYHAIIDDYTHTIEFDAGAVEGQTFVTKAWGPNARTIHGVYMYEITS
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Institute for Fundamental Biomedical Research
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