NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210016_1098864

Scaffold Ga0210016_1098864


Overview

Basic Information
Taxon OID3300025837 Open in IMG/M
Scaffold IDGa0210016_1098864 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG02_land_8/20/14_3.00 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1339
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012423Metagenome / Metatranscriptome280Y
F039475Metagenome / Metatranscriptome163N
F057887Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0210016_10988641F039475GAGMEKLNVLIYTKDEDYNPLGSVQLELFQLDDEGNETYIGKSISGDDGRLEVSKTALGGEGARIRVRNAKRLSGEDIVQTSDGIYSTFIVSSDETVQKVEIVFQIKKKHNISINVTWK
Ga0210016_10988642F012423N/AMVVTKYKGDNCAIAIGISNNADSTSQNYGLSLCLKDETGDEYTLTMTGLVGTLLAGGFKKITDTDKIVKNKFYFEKGTIYNYNITATFPDMKEGKIYGQLGVYDGTDEDSAWKAGTTYDHVYNFEKKKFSMSISATWK
Ga0210016_10988643F057887GGALLAATIAPDLSFSDILYDDLEVYRDIENNEYVFDGSGDIYVVSRPWNPIEPIIFISIDTEKEYIYNETTHSFVDKKIVYEAGLGIFKALSSILKKLKFTGSASRVASVLARIKNIRTGKKILYWNKKRRIWTVAKDVSLLGLVYFGLGQGGQVATRV
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Institute for Fundamental Biomedical Research
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