NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210016_1227403

Scaffold Ga0210016_1227403


Overview

Basic Information
Taxon OID3300025837 Open in IMG/M
Scaffold IDGa0210016_1227403 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG02_land_8/20/14_3.00 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)708
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007959Metagenome / Metatranscriptome341Y
F037574Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0210016_12274031F037574N/AMTGIFADEASEYTTITISKDTAKKLKEFFLGKETYNYVITFLLDYYNEKTYRI
Ga0210016_12274032F007959N/AMKKPIEFEKFKQEYKKDFDIPVLSAKEKDIFIYLFLLLRRKMIKGMFPELMNSEIMFSKSDLKTLVLKNIVIFKNHKRGWIISINPRYITKNAECSYCGAKFSEMVYFRQNNIICPGCGLRMHNSTTAEKVDNHSIAEKAVINVPSEHVISDISGNIKVTDIVLAPTAME
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