NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208872_1018207

Scaffold Ga0208872_1018207


Overview

Basic Information
Taxon OID3300025838 Open in IMG/M
Scaffold IDGa0208872_1018207 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3279
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus basilensis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041558Metagenome159N
F042700Metagenome157N
F071899Metagenome121N
F104335Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0208872_10182072F104335GAGGMAFWEVTGTVVTEDNNAVTFRTFVPAEELVDTVNEGLDAIFEIENPEVYDEPETMTNGCFAMAQGLAAIEPPPAVNVHVEVHV
Ga0208872_10182073F071899GAGGMQARVKLTPHIIARLIVGKPVTVNLPAGTSSLSLVTEGKFHEFLRAFHAPEEFEPETSHTEVIGLFDLIFGSH
Ga0208872_10182077F042700N/AMDAQKEAYKLLKEHGEQIRHNKHEAWRVNGHLITITKTKTDDRGWLNKLCEIRRCLKTPAEEVYRQARCNGKNRFSDAPAAQHSVSCAGPAATR
Ga0208872_10182079F041558AGGAGMPPRKNQPKKATAKAKPAPVKPTAKTESVGAPAVVAPQALKFTAGDLVRKALQLRQQHTLNAPAATGEALGSSKGPKPTIVEFKVTLSDGTVLHATGKHADVMVRFSNECQEICQTQGLSAYNGPPLTHYTAEEWAAMNA
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