NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208917_1001614

Scaffold Ga0208917_1001614


Overview

Basic Information
Taxon OID3300025840 Open in IMG/M
Scaffold IDGa0208917_1001614 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11199
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (91.30%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056170Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0208917_10016141F056170N/AGIPHSHQLLLKENSLKPTTNQSPSTSWQQDVDGLIHLAWYCAHAPVLRKFAYNMVDRSLRSASDVISAECQNVVNNTMSVIQWCRWWSHDALDEYWKIRDILTEERNGKPPTHRQICQWRDAQGKRPFTVEHEYPILIPKKGVLDRGWTEDELNAWMWQFGRATIITQEENARLLSHTEDQAIAAKRYSEGGVVVCQHPHFVEPRDET
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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