NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208917_1003080

Scaffold Ga0208917_1003080


Overview

Basic Information
Taxon OID3300025840 Open in IMG/M
Scaffold IDGa0208917_1003080 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7948
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040126Metagenome / Metatranscriptome162N
F041804Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0208917_100308011F040126N/AMKKVPLFEDFVPVGFGGDNAASFSLGGVNNVETGYNMDAIVGPVDQCCSHVAEQANMYETNDNPDHTAEAYIKEAKKHINDKIDEACENYSATNEGTINEGTDIGSWNQGGVRGNENVLVTTFAGPKDIEDFGLGRKCMQINVGRS
Ga0208917_10030802F041804AGGAMSKTRLGFYDEASQKTEFTDFNSVEELNAFYQEHYIPFDNCFVGDIVSIELFLAASDLYDFVTEYRASDLTGDFRLTTGSDFDLQRNTQRAVLTKRQKSFIDKAVQDYRKYYNEIYRIYKTGIYSPCYAEPGWSEGTWYLNQLRLALTSNNNVAEFPYDDANIINEPPE
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