Scaffold Ga0208917_1021923

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208917_1021923

Scaffold Ga0208917_1021923

Overview

Basic Information
Taxon OID	3300025840 Open in IMG/M
Scaffold ID	Ga0208917_1021923 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2712
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002942	Metagenome	518	Y
F004131	Metagenome	451	Y
F005264	Metagenome	406	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208917_10219231	F005264	GGAG	MKWWNIAAALAVLAGGAEAEILMMSHDFTEFQHPFWATEADGKGDLIQWDLTDKCGGGSVWLNADGFFNNHLDRQYTAHGYRYGIKRIPGAPV
Ga0208917_10219232	F002942	GGAGG	MSEEQFTAFCVVLAAVSVPSVSLLYVLAWELWRYAKRAEQ
Ga0208917_10219233	F004131	AGCAG	MRAKRTTVVADVSQFPFNTMRRQLITPLMREAAELLWPAEQRRVTVLLRAPEFWDECTNADLEASEELADICFDLWVEAMT

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