Scaffold Ga0208917_1043281

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208917_1043281

Scaffold Ga0208917_1043281

Overview

Basic Information
Taxon OID	3300025840 Open in IMG/M
Scaffold ID	Ga0208917_1043281 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1811
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019396	Metagenome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208917_10432811	F019396	N/A	RPCMAQQTYEPLVSSDGKTFCKNYNFPNDYAYRDTTDRPLYTEEVVDWFFENEIKYIEQFKNKPYAPEVIDIKDKKIYIKWYGKSCNQIIYGKESWNEVDWLRQISDIIYDQYNEGVFKLTMYPHCHYIDSTGQMKAIDWYGCVPVDAPYIGEKYMQGIIHETAQFRLEETGKAVDNVLNLKTMFQRSLGTHVKWGEHSMRNIFNRIFL

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