Scaffold Ga0208917_1054767

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0208917_1054767

Scaffold Ga0208917_1054767

Overview

Basic Information
Taxon OID	3300025840 Open in IMG/M
Scaffold ID	Ga0208917_1054767 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1567
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
unclassified Hyphomonas → Hyphomonas sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035289	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208917_10547673	F035289	N/A	MAGLGELYNKEILEDQPTSSVPKVDSDLAEPYDPSAARGLAGIAIAGAGAVALRTPIGRALKKITSLTTPKLPVSRIKEPVDEVEEILTIAPTKVERGQLMTRPQISQQEQIRQEAIQKSNELKKLAYNNPLSRGGKTNRIGSSLWDYIARHPIAGARKPEEWIKDFKSGGPGSFKTGNPNFKSINQSVKKEELWDSNLVQFDKDGNVVGGFLKTAMEKKIPLTKMDLLYIVEKAPVNNLKMRKLRIDPKIVDDAEEVSKTLDATLGEISTKISNIRLDDATQAQTELFQRIVQQQ

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.