NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208917_1186069

Scaffold Ga0208917_1186069


Overview

Basic Information
Taxon OID3300025840 Open in IMG/M
Scaffold IDGa0208917_1186069 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)700
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029600Metagenome188Y
F032639Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0208917_11860691F032639N/AGLYVGSELKWGVDDVRNVLERFGMATSTSKEDVERILIAAFQDNYRLMETIDEAIGDTVAYMIDEGQLNTDEQ
Ga0208917_11860692F029600N/AMKYWNGEGQYQDLFDKHFKNLVPESGRADTEAGNALRAIARINHDIFNNGAGNIVHEEVDVDDDGEWYNILSIERWWEEFFDDIEEFSGLDADRLKIKIIAYVRSDQDGGLSDLMDDYIDYIVLKVDNQLVAK
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