NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210054_1189931

Scaffold Ga0210054_1189931


Overview

Basic Information
Taxon OID3300025842 Open in IMG/M
Scaffold IDGa0210054_1189931 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)741
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012423Metagenome / Metatranscriptome280Y
F039475Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0210054_11899311F012423N/AMVLTKYKGDNCMLEFGISNDADSTSQNYGLSLCLKDETGEEYTLGIIGVIGTVLTGSFSKITDTNKIKKNKFYFEKATTYNYSGAFPFPDMKVGKIYGQLGVYDGTDEYSELKGETTYDHAYNYE
Ga0210054_11899312F039475N/ANIFIYTKDEDYNPLGSVQVEFFQLDDAGNETYIGKSISGDDGILEVSKTALGGEGARIVVRNAKRLSGEDIVQTSDGKYSTFIVSNDETVQKVDIVFQIKKKHNISINVTWK
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