NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210036_1094671

Scaffold Ga0210036_1094671


Overview

Basic Information
Taxon OID3300025844 Open in IMG/M
Scaffold IDGa0210036_1094671 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1169
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076875Metagenome / Metatranscriptome117N
F098659Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0210036_10946711F098659N/ASVITIGIKRNSAIGTVYFDKINMNIGYINNAGTFTSVSNLDASHAFSTASETYVNLCLQEFVGITNDYSLANKRFAVKVNVFAHVDATTTSGQLGVYHTRGSADSYVEVELK
Ga0210036_10946713F076875GAGGMWGSIEKVRNICGITKEQINDIVIHDMLEQTDRKVRDRVYIFRRLT

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