NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209603_1000908

Scaffold Ga0209603_1000908


Overview

Basic Information
Taxon OID3300025849 Open in IMG/M
Scaffold IDGa0209603_1000908 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33167
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (18.87%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020903Metagenome / Metatranscriptome221N
F029278Metagenome / Metatranscriptome189N
F038672Metagenome165N
F043411Metagenome / Metatranscriptome156N
F056150Metagenome138N
F073424Metagenome / Metatranscriptome120N
F080238Metagenome / Metatranscriptome115Y
F081203Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209603_100090811F043411N/AMKKMEWMKMKKFKDKMLKRRLTYNNKRVYIKSLDSKLAIVSHTEEGNYKQFKVNIEDLVEFK
Ga0209603_100090812F073424GAGMKLTDKEIKEQKAKFGSKAVNYFVRFMEARRKWRRLPDYFIKQVIENSDKL
Ga0209603_100090816F029278N/AMEITIPTKWSDVTIGNYINLRPVLNSELNPIERVINILAVLTGQKRDVIKNISLDQFKSIKKKMSFLETELPNKLTKRRFKIGGQWYEFKVDAKKLLFGEYINSMEILQNAKEDEEAIFNNLHHILTTICRPVKKTLFGWKHIKVDSEILRKTADNFLNNMPMTIAYPIGVFFYTHSEDLTKAIKTSLMVEAERIAREAKQELDLVRDGDGGTP
Ga0209603_100090817F020903N/AMTDQLDIFSFDESQLEEVKIDNPTTLTQVFNNIAADMVYCLKQSVIKEGLVFRGGLEQSIKMPIKMFGNRMTAILYLADYYDYLNKGVKGIGGQKNVYETVTSKSGRRYRKPVKDNSGNILKEAWKIKAPESPYQFKKGPKVSHVKEWSKSKGLNEYAVRNSIAHTGIKPRYFFDNCMEQTFYGSAFNKFKTDIRIVAGERIAKGLKEIIKK
Ga0209603_100090819F080238N/AMEEKLTEFEKMLKELENKPVPERTCNIDDENCESCSG
Ga0209603_100090838F081203GGAMDKYEFYYRQRQEWEYWQATERHNFLSDRLLGVLTQAKWNRDILKTLKLSDNDLEIHRNRFSQMITQVVKISLELKELAINYNPKRIKQIIIILTKIKNYNNETIKNS
Ga0209603_100090847F038672N/AMDELDVMLRKNKLDIMIIKASADIEKTNNKLKKEGLETLVDILDLIHDLQHEIRQNYRDISKLKYENAVAYKENAILKTDFSTYKHNLKQAELKSTKNV
Ga0209603_100090851F056150N/AMDRKLIKKIENFIFWIGREYNVVELEDFKQDIFIILLNKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDQVLKDLINSLQGLDRIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.