Scaffold Ga0208645_1128463

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208645_1128463

Scaffold Ga0208645_1128463

Overview

Basic Information
Taxon OID	3300025853 Open in IMG/M
Scaffold ID	Ga0208645_1128463 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	999
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005847	Metagenome	388	Y
F010614	Metagenome	301	Y
F043911	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208645_11284631	F005847	GAGG	MAKAEPRGRIPQLYREMQIGDRVVVNIERQRAFHLLRSAWERHYRQQMIADGYAVPWLYLEPIGKNRTLVVRMRDEAEVKAARAAFLAKGKKWAST
Ga0208645_11284632	F043911	AGGGGG	MTQAEPYVVYRLDNYGRRQYVFRQLSPVDCRAPIHRKGIAAQGWVNSLPKAKTYTGKAAADAAAKAIADATRHGRDAMRVISLEQAQRERAAALKQRGR
Ga0208645_11284633	F010614	AGG	MNDDETREQWASLCRMYITRGNAEIDQMVSELHAMAGIREGFEDADAWEAMHDRAVQDAESQRPNSPEYAWALLRVLGVKLWMVRALEVMGEGADG

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