NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209176_10079430

Scaffold Ga0209176_10079430


Overview

Basic Information
Taxon OID3300025854 Open in IMG/M
Scaffold IDGa0209176_10079430 Open in IMG/M
Source Dataset NameArctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)758
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameUSA: Barrow Environmental Observatory site, Alaska
CoordinatesLat. (o)71.299Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004185Metagenome / Metatranscriptome449Y
F087101Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209176_100794301F087101GGAGGMADRKRISASGDMPLRVTGEAVMYLSSLSQFHGIPDSALIHLAERRTRIYVPDRWVAIALILSNRILIPVPTLHGQVQGNSSEDPALAKLEVIIGGRVPR
Ga0209176_100794302F004185AGGAGGMSLEKEFIRDGKRRIIGSVTTGYVGSFESIVRDEQNNITGSTSERFNTTRDDHGNLVSINSPDPGLLLGRRK

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