Scaffold Ga0209099

Basic Information
Taxon OID	3300025858 Open in IMG/M
Scaffold ID	Ga0209099_1006818 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209099_1006818 Open in IMG/M

Source Dataset Name

Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7871
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

7871

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Ecosystem

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	Japan
Coordinates	Lat. (^o)	35.92	Long. (^o)	139.63	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Japan

Coordinates

Lat. (^o)

35.92

Long. (^o)

139.63

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F040985	Metagenome	160	Y
F041560	Metagenome	159	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209099_10068181	F040985	N/A	MIDITESPGLISFAGNPVIFEACSSDYQVSNGSCAHFEMIVSGIDTIEGHQFTLKFAGKTLVFKSAGFTGFDGQLFRVAFYGQTFNDFAGNIYQCFLENYDIQKYYNVTLGPVGAAERKITLQAKNPGDEYSITLTDIGVSGVAQGTNTAGADTVYRDFFSILCLIRDAYGEAIGEDLKPADFIGCARFDISDYLSSKFSTWQLNRFEFPELTGNVKMHGWDYLLKYRVSFAESIAGHVRGLQSTIWKYALAGGLNRELLVSLNEKGQDYFSIEENKYKFLTWLPTTKYSRSGVTEKLFFLFQDNPAGIQYRLVVIVNFTDGSHKIINATPMVAFTPYSVAEFKVGFDHLNLVNAVYKKTVRSWEVMLMDSDDEYLSERRIFIYDNRVFDNEKVFFYRNSFSAYDTFRFLGKTELNLEYERATGNTIREEKYSFFNAPSRQFSAKETGSCKANSGWITLTEKNCLRELLLSTESYEQIGKELFQIVVKTAKVTPFLKDGEYLYNLEIEYERAYQNSFFSLHNPESSANPVIPPEALTWDNME
Ga0209099_10068182	F041560	N/A	MLSLLIADQPLDLSDDFSVSLNLKSPLFHDVGDYSFPFKVPTTERNMAILGWKNRIASSRSIYESYEGSFRWNGILLFKGQVRIKTAGEKTFEGILYINKGNFNYEVKDLMLNRVDLGLKEFASDQDAINYFNWSLTHFYPEVDFSMPQITNLDYYDPPATNPELMAYNYIFPDGWLHKTTSDGSQRTILLPFLYLKYVLNRLAEIFGYRIEDEFFTSCTELSRLVIYHSVNLNELLSGLQQLYYCRFVPRVKVSEFIAGLEKWFNCSFHADSTQRVIRIVANREVLLHSQLVEFSGNILSISQEIPDEITGYRFMVGPDAGDKVYQSQLDAEKEITDFIRGAVGTFSEIPPYPFTLLGDIYYVVDTNTWWQLGVNSITFLIEWQQLPNGPALTDKFFYKYGDEKNKFETCFSSLYDRFGVVSCGNPGTDKDKITPRLFWVGMTGGWATPSELRGFSDGSNLSLRYPGSQGIFNLFWKDWVDWIIKTRKTVRIEKQMDFIELKTMDFTKRYRMNGINYLVNEISVTLTKSSIKPALLKCFTSP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209099_1006818

Overview

Ecosystem & Geography

Associated Families

Sequences