NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209099_1008675

Scaffold Ga0209099_1008675


Overview

Basic Information
Taxon OID3300025858 Open in IMG/M
Scaffold IDGa0209099_1008675 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6662
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)35.92Long. (o)139.63Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092957Metagenome / Metatranscriptome107Y
F096520Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209099_10086755F092957AGGAMNTRGLLSMTASRFCDETCDLIYNMLDPQDDGSCNVVPVTLTLAASIQPLQPIDIERLREGGIEIQSGVSIELAEALEERPERIEARGRAWRIQSWSFVKAYEDESGVPYGTVVAVCDEIRVAPAATE
Ga0209099_10086759F096520GAGGMKRKKLKKSFLSSIWAFISGIFRKPKARAKNTQESLSVTIGSCVATFVSNLSGESISFGGDTFYNEEDLLGDITLDTERAKRHMSADGSRDVLMQSMPRAGTREIKFLLGDNLDKLKSWGQSRIQTVFDFDFLYTYNTQSKEGQRIQRHKRCVFIDLPLQGIGRDRGYVTAKISFGDVAEVDPATDKEI
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