NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209099_1010512

Scaffold Ga0209099_1010512


Overview

Basic Information
Taxon OID3300025858 Open in IMG/M
Scaffold IDGa0209099_1010512 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5865
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)35.92Long. (o)139.63Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096520Metagenome / Metatranscriptome104Y
F102391Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209099_10105121F096520N/ASSLWASISSIFRKPKARAKNAQESLSVTIGSCVATFVANLSGESISFGGDTFYNEEDLLGDITLDTERAKRHMSADGSRDVLMQSMPRAGTREIKFLLGDNLDKLKSWGQSKIQTVFDFDFYYKYDTQSSAGGRIQRHKRCVFIDLPLQGIGRDRGYITAKISFGDVAEVDPATDKEI
Ga0209099_10105128F102391GAGGMAFQLDTDGNIVFDTVTGLSKQVSGLQSLEQDAISECRCEQGGNFADATYGRDPLVWKLSQKNADKINDIKRIVTKYYTPYSISYDNGIITVN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.