NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209099_1028142

Scaffold Ga0209099_1028142


Overview

Basic Information
Taxon OID3300025858 Open in IMG/M
Scaffold IDGa0209099_1028142 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3035
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)35.92Long. (o)139.63Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021528Metagenome / Metatranscriptome218N
F069750Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0209099_10281422F021528AGGAGMIDTLKLMLNEYEIADDSEIRVQPASYELGTGSKVEYPLFQTPSHGSHYGSKAYLNADNWNLTLKPLPGGRATGAFLQLSVPKNYYGSNFYSVGEEGTKAVLNKVEGELLEKGVHTPLNEADISRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERNMETGGLPPTMRFEHRLLNKQKVQNVYGFGRVAELFKGGYQVVKEKQVESWESSLFNFTTEELVLIGSKQLEQEMKRFYEKSPSGWFSKFLKAYGAYYLASHAGKEVVIEALQNLEVDRMKIWRAVQVFEEAERELLVLKQEEGSKKTLGALYEELRRKVCLN
Ga0209099_10281426F069750AGGAGVEGERFLIRERKKQKGKKTQFYLIRLQPFQYVSSLFPTGEQESYTFDYEQKLYRLERKEHSVTLKFV
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Institute for Fundamental Biomedical Research
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