NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209605_1001588

Scaffold Ga0209605_1001588


Overview

Basic Information
Taxon OID3300025861 Open in IMG/M
Scaffold IDGa0209605_1001588 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC035_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24524
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.84Long. (o)-89.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092957Metagenome / Metatranscriptome107Y
F102391Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209605_100158811F092957N/AMAARRIADTTCDVIYNTLTPEDDGSATVTPVSMTLKASIKPLQPKDIERLQMGGIEVREGVSILISEALDERPERIEADGKKWRVLSWSFIQAYENESGNPVGTVVAMCDEIRVLPADVE
Ga0209605_100158822F102391AGGCGGMAFQLDGDGNILFDAVTGLAKQVTGLQSLEQDAMSECRCEQGGNFADSSYGRNPLVWKLSQSTADKIADVKRIVTKYYNPFSITYENGIITVD
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