NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209605_1024581

Scaffold Ga0209605_1024581


Overview

Basic Information
Taxon OID3300025861 Open in IMG/M
Scaffold IDGa0209605_1024581 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC035_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3082
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.84Long. (o)-89.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021528Metagenome / Metatranscriptome218N
F051104Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0209605_10245816F051104AGGAGLFELRIAEAIEEEAVLSQNLIEEGFSHAFKAGELLQEVKSMLHSEEEFEQWLQENCSKVERGVAFSCLRLFNGETVKVEATLKREENHKRERG
Ga0209605_10245817F021528AGGAGMIDTLKLMLNEYEITEDSEIRVQPASYQLGTGEKVEYPLFQTPSHGSHYGSKAYLNTDNWNLTLKPLAGGRATGAFLQLSVPKNYYGSNFYSVGEQGTKAVLSKVEGELKEKGIHTSLIEADMSRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERNIETGGLPPTMRFEHRLLNKQKVQNVYGFGKVGELFKGGYEVVKEKQVESWKASLFSFTTEELVLLGSKQLEQEMRRFKERSPSGWFSKFLKAYGAYYLASYAGKEVIVEALQNFEVDRMKIWRAVQVFEEAERELLVLKQEEGSKKTLGALYEELRRKVCLN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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