NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209605_1026032

Scaffold Ga0209605_1026032


Overview

Basic Information
Taxon OID3300025861 Open in IMG/M
Scaffold IDGa0209605_1026032 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC035_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2957
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin035(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.84Long. (o)-89.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016798Metagenome / Metatranscriptome244Y
F030054Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0209605_10260322F016798AGGAGMKKFILILVLLTLVSCEKEVKQLQRSDVIYNFIALNDDLDYKLIYFCDKYNAFEHFYDIKHTIYNEIGEHNYYKDMQSRMAVVSHTKDTGTCQFQHRTFYYLAEKYDIKGANILSESQQISVMVQAFRDDKKNYWNGYKKLKKILVE
Ga0209605_10260323F030054N/AMNKREKKLFFVILILLAVIMFMSNSFRKKNYTIDFNNNLINRYKNDIKSYNIKIDSLNAVLLAKKNIDTVIITKYKQKIDSVYAYNYNDYVIFYDTLLNTNVAAADTFLCFDSMSVQKLTIKLLHLQQDSELLANCYIQNNLYANIINIQDSVISLKDSVNASLETMYKQKVKKVKKQRNVATGIAFTEFLILIGVLAK
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Institute for Fundamental Biomedical Research
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