Scaffold Ga0209483_1001357

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209483_1001357

Scaffold Ga0209483_1001357

Overview

Basic Information
Taxon OID	3300025862 Open in IMG/M
Scaffold ID	Ga0209483_1001357 Open in IMG/M
Source Dataset Name	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18640
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (52.17%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	USA: Barrow Environmental Observatory site, Alaska
Coordinates	Lat. (^o)	71.299	Long. (^o)	-156.61	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F063097	Metagenome / Metatranscriptome	130	Y
F070252	Metagenome / Metatranscriptome	123	Y
F084395	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209483_100135711	F070252	N/A	MKFLGSLLLMVLSFALSARCVAAQDDQDKDSYFTGTLVENAPDHLKVSRVLQGKTEAHVFKITAETKVEGGRLRLRQRINVRYITSDDGDVAILVIVRPSKAQLKKQK
Ga0209483_100135716	F084395	N/A	MLLWRDDFSTLTLEEVLRYQLENRAWSKDLRFRSNQLVNKRLANEITQDDYLTNRKITRQEAEECQRRAAILDSQISRSGVRPLLHAS
Ga0209483_100135717	F063097	GGAG	LSVQPGKAAAGKPKVVDPANVAANLRDLTVHLHRGNAAEAKTIAAQAAEQLQEIIQADDPESVLIARAQQTMFAIEEVRIMLSQDDVNGALAAARDATKEWRIK

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