NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210051_1082525

Scaffold Ga0210051_1082525


Overview

Basic Information
Taxon OID3300025868 Open in IMG/M
Scaffold IDGa0210051_1082525 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG23_combo_of_CG06-09_8/20/14_all (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1881
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008120Metagenome / Metatranscriptome338Y
F063344Metagenome129Y
F104465Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0210051_10825253F008120N/AMKNTETSMSEHIKAEAIRRKILWRINLLERQIFECKKGFTCFYAQVQKKSTLSAGEKNENSVSWIEAFDDFTETWEEMENVKDEVDWMIRDIFFAVEREEEEYKKKIKNNKKRTQ
Ga0210051_10825254F104465N/AMIREKIDENKKIPKEYNARGERIYKNPINRENAKKQEK
Ga0210051_10825255F063344N/AMKKPTYSEYQNIQRHKISNEYSVMFFTIGRCAFFRYFEDDGIEVSPIDRSCVLPMLSGEETKKLSKFLDKIKKEYIKYIF
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