NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210051_1102687

Scaffold Ga0210051_1102687


Overview

Basic Information
Taxon OID3300025868 Open in IMG/M
Scaffold IDGa0210051_1102687 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG23_combo_of_CG06-09_8/20/14_all (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1578
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016112Metagenome / Metatranscriptome249N
F098659Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0210051_11026871F016112GAGGMWGSIEKVRNICGITKEQINDVVIHDILEQTDRKVRDKVYIFRRLTMHADKIGTNKIRFDVNKIGDGNRDTSIDDTDISIYRKNNGVYELFPIQKLDISLNEITFKTDIGENYDIIVEYFEDNFHFSIDTLSDASSLFAAAICMRSLPLTEKDNNAKEYERRAKEIITRSSASFV
Ga0210051_11026873F098659N/AVITIGVKRNSGDGNVHIDKININIGYVDNTGYFNSANNADATCVFSTESQDYVDLCLQDFVGIASDYPLTDKRFAVKVNIFAHVDSGTTGQLGIYHARGSADSYVEVELK
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