Scaffold Ga0209757_10000646

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209757_10000646

Scaffold Ga0209757_10000646

Overview

Basic Information
Taxon OID	3300025873 Open in IMG/M
Scaffold ID	Ga0209757_10000646 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8243
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (26.32%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)	1000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070556	Metagenome / Metatranscriptome	123	Y
F092746	Metagenome	107	Y
F092748	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_100006462	F092746	AGGAG	MSEIKNPQEIKRQLEEADNMIMILQDVIRRGMKIDPSEAQRRFKVIREKIKFANDNIR
Ga0209757_100006468	F070556	N/A	MGFHKRYINDSQIIKIYRSQGNQAVIDLYTNGVDAIVTSGDLSEHVLDILEIGLLTKTDKWNKISELISEASIKKGFS
Ga0209757_100006469	F092748	N/A	MRPVTKTPASLNMTAAIDRKKVDHLGKNWATIDFEIKDNVDATEFKYSKMKPVVGTFVIGNRRVDVTYSELNQIMHTAGAAMQQCDGAYRLGKWGIARKS

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