NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209757_10004374

Scaffold Ga0209757_10004374


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10004374 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3581
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004818Metagenome422Y
F056673Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0209757_1000437410F056673AGTAGGMVLSIRIGVPHISRRKKYPASASEGDFRYNNSEHGFIVIVIGTIFKPSKAKNRSKRWLPQMTRQQIWQEIVLHVEFMKDLYPKSNGRLCRYCHQPWTYLTRRKRSGTLKPRKRGPTHKTNFTIDRFDPEFTYLAGNLIFCCNACNDRKHDSTPADWKNFIRVEKERNDYLE
Ga0209757_1000437412F004818AGGAGGMNTMDISKRFISWRIRGLFVAEKRLKVLLQADTKEGASDKELDALYKVISGQLKGISDMQNEIITLQL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.