NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209757_10008016

Scaffold Ga0209757_10008016


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10008016 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2760
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000161Metagenome / Metatranscriptome1845Y
F002963Metagenome / Metatranscriptome517Y
F040337Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0209757_100080162F040337GAGMKELLKPDTTWLVVKWVHYDSLSFTDDYSVPKATNNKGKADQYLHSLNMLNDNKNTSYFLVSVPHE
Ga0209757_100080164F002963N/AMINYNIVLYIGLFLIVGGFCLFLYSQHRLRQLDIEQFKNNQLLKSFNKAKENDLK
Ga0209757_100080167F000161N/ALTKKFTIDVSHASPAQLTTIALELKIMSNSWEKFGPKIFINGEKLQAPSLRVEGSSHKQQATSLKKTTIK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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