NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209757_10014936

Scaffold Ga0209757_10014936


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10014936 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2109
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001081Metagenome / Metatranscriptome784Y
F001955Metagenome612Y
F027200Metagenome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0209757_100149362F001955N/AMIKELKTLLQKYFGISSPKPIATKKPTPARVVQPHEKINSLVEEIGKDMFGIRVRVEWGRCPYCESVTQMLSTRLGYFRCSTCKEITRQYVNGKIAYLPVDDPLVLSDDPQA
Ga0209757_100149363F027200N/AMAKLFTNEKETKRAIKAAVDQYEIYRNNTLAKHKRGRKNRAQNKRAKLRGNS
Ga0209757_100149366F001081N/AMKELIAPLKQTKICDNCHGNGYLNVVDNQNLTQVKQCWVCESEGEIKNYDQAEVDDFIYNFYYRKRLQ
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Institute for Fundamental Biomedical Research
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