NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209757_10021471

Scaffold Ga0209757_10021471


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10021471 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1794
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001955Metagenome612Y
F002453Metagenome / Metatranscriptome558Y
F011409Metagenome291Y

Sequences

Protein IDFamilyRBSSequence
Ga0209757_100214711F011409N/AADCLRAKRVAERNIQPERVQFACGPNIKAEVEYIEAKGETAARTRILRVIEHGYEEGEYDAGRY
Ga0209757_100214712F001955N/AMIKELKILLQKYFGISSPKPIATKKPTPARVVQPHEKINSLVEEIGKDMFGIRVRVEWGRCPYCENITQMLSTRLGYFRCSTCREMTKQYINGHIAYLPMDDPHVLGDEPQA
Ga0209757_100214715F002453GGAMAPVEYPTTYNSWYECSRDAHVESVKLLSRMGYKYVNDYKVGTKYHCKAVETY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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