Scaffold Ga0209757_10031860

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209757_10031860

Scaffold Ga0209757_10031860

Overview

Basic Information
Taxon OID	3300025873 Open in IMG/M
Scaffold ID	Ga0209757_10031860 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1505
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)	1000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F060030	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_100318601	F060030	GGA	MVLQKLLIEEGIKRGLKESQKYSVSVLGYDFIGLVSRLSVFFIMAFLINSYFIATIQGGIWLNSLGGFFNMKFPTTLPEWLTQLFTTGYKGFTFWNLVTTISVLIVVVEAMQYDKMLKEKGEKPNV
Ga0209757_100318603	F000704	N/A	MPHTTGEILPSRVKAVITYGIDNYGEDLFLPFTDVGLTETALTYSGVAMTRDLENSNQPMDVFPAVFSDTDSGLLLNEGNNTAFSQTYTFLPDMTAVLYAIHLNIPAALTCSAYTSGGLNVGALHIKITERSTDNRLLYENTFQSGAATLSATGTSLHWFTRDIVETIQVTKGNPIDILVELITVVTGTNTRQEGYVPVAPYLKTAVMKRFTPAGIALHLHADLSHADGVMKYKKTRVSLLGQ

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