NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209757_10038441

Scaffold Ga0209757_10038441


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10038441 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1383
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F014859Metagenome259N
F060030Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0209757_100384411F000704N/ALFLPFTDVGLTETALTYSGVTMTRDLENSNQPMDVFPVVFSDTDSGLLLNEGNDTAFSQTYTFLPDMTAVIYAIHLNIPAALTCSAYTSGGLNIGGLHIKITERSTDNRLLYENTFQSGAATLSATGTSLHWFTRDIVETIQVTKGNPIDILVELVTVVTGTNTRQEGYAPVAPYLKTAVMKRFTPAGIALHLHADLSHADGVLKYKKTRVSLLGQ
Ga0209757_100384412F014859AGGLVNELIPPEIIPIIWFAGISVTVYFFFRKFSDVIKARITHTTRKNKTIDTEETGNQIDNLINNAPRILDEVNKEITAQREQGVTDEQMKGLLQKKQLLELGTSIPPEVYNIVAKPLVKKLIGFVGKI
Ga0209757_100384413F060030GGAMVIQKLLIEEGLKRGLKESQKYSVSVLGYDFIGLVSRLAVFFVMAFLINSYFIATISGGIWLNSLGGFFNMKFPTTLPEWLTQLFTTGYKGFTFWNLVTTISVLIVVVEAMQYDRMLKE

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