NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209757_10044548

Scaffold Ga0209757_10044548


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10044548 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1293
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018619Metagenome234Y
F083250Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209757_100445481F083250AGGAGMAWTAPRDWTAISGGIVTAASLNTDVRDNLGVLSTHTHTGAAGMGATTMSGLTLTGLVNLTFADTGAPDAAGELQRHGNDLKWYGASVVNLTAIDAVAGTGSLRTLALTATSAAAGNHTHVPGTPNQLIQAVSGYVNS
Ga0209757_100445482F018619GGAMAVASDLNTHIRANLLVLSTHAHSGAAGMGSSTLSGVSLAALVIPVLASQGSSPGTAGMLLRKSNNLEYYNGSAVVGLYADGVAGTATLRTLGSGSTQAAAGNHTH
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