NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209757_10058642

Scaffold Ga0209757_10058642


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10058642 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1138
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008755Metagenome / Metatranscriptome328Y
F009404Metagenome / Metatranscriptome318Y
F041254Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0209757_100586421F041254GGAGMEKTKLTKNEYLDSLDPDNLNLEKKDLIHFCHGCINEWKANKIANFKYIVAMELMIGAVRVTPEDVMKKVWKKILV
Ga0209757_100586422F008755N/AMNKSRLARDLWRKVFNDNLINLSDGDARKGVVRDFLNDPINKKSGWKAKDARFFRLGFQKVARENNFNVMSIGVAPTPSRSKTQKGNLNLNVKSKQKNPMPLGESIKPPTEQEKKAGRPIPTTPQLEGQQAQATYYTSQSIGQIFETGVNIISARTGCSPLSQNERQALGEAWLPIFTQYFSGENSKWVMVALITIPIALRMIAEIQANKKKKELKEKYGMNDVPTKDVPKTKSAWENMSHGKNETNKK
Ga0209757_100586423F009404N/AIPMSDEIEHIQPKGEALVKYCALCGVEFSETVLTNHWLKCDSCETVFQVKVKIGA
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