NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209757_10065053

Scaffold Ga0209757_10065053


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10065053 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1085
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001494Metagenome683Y
F027200Metagenome195Y
F097492Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209757_100650531F097492N/ALVEEIGKDMFGVRVRVEWGRCPYCENITQMLSTRMGYFKCSICREMTKQYVNGKIAYLPIDDPHVLEDGTP
Ga0209757_100650532F001494N/AMKERGNMQKRHKKDPVKDFQKQCVDQRIDLFYVANTIRGILERKKDTEVRELLQEFEDECVHNIGMNALIERYEY
Ga0209757_100650534F027200AGGMGKLFENEKETKRAIKAAVDQYEVHRRYTLAKHKRSRKNRAQNKRTKL

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