Scaffold Ga0210040_10018539

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210040_10018539

Scaffold Ga0210040_10018539

Overview

Basic Information
Taxon OID	3300025875 Open in IMG/M
Scaffold ID	Ga0210040_10018539 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from aquifer - Crystal Geyser CG19_WC_8/21/14_NA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7257
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location Name	USA: Utah: Grand County
Coordinates	Lat. (^o)	38.9383	Long. (^o)	-110.1342	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042189	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210040_100185395	F042189	GGGGG	VAEELFEVLLVDGGQRWHAGFVVGEQTDELLRRGTRVPVFGSRAGLEHYVQGVAHELSDELPDEIDLDLGGWLPRGAPEPTTQEVSELWHLLIDDPVAGRPLHGEVVEEAYDDLVEDEPDWFARHGTLARRALGDAVRRLRQVLAPS

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