NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209555_10260814

Scaffold Ga0209555_10260814


Overview

Basic Information
Taxon OID3300025879 Open in IMG/M
Scaffold IDGa0209555_10260814 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)676
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027314Metagenome / Metatranscriptome195Y
F037937Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0209555_102608141F037937N/ADVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA
Ga0209555_102608142F027314N/AMACNVTLADISYSCDDVAIGGIVELHVANRSDALIALTRTDADREVTAATAVTGVSQISFNNKDGFSVFSEVKTVSADGVVATVPTVSVELPKMTADKITALNDISKGGAELVAFVKTAAGTYHVCGLDYGLYAGTVDANSGTGRSEKNRFQLTLTGDESGLSYSI
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