NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209534_10003882

Scaffold Ga0209534_10003882


Overview

Basic Information
Taxon OID3300025880 Open in IMG/M
Scaffold IDGa0209534_10003882 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14026
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009068Metagenome / Metatranscriptome323N
F088826Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209534_100038826F088826AGGMRNKINKRNKLACVLSYKGQTRKCFARDWDHLKQRGSEAIRRTWYLWCNVNLADLHSVSSNEWHGIVYSVCGKSINVRVYDREDRVKEAAKLLGSIGGSSGTGKKKVRGDSNYYRVLRYKGLEKQRKKHDESNNK
Ga0209534_100038829F009068AGGMAILQQSTSGEGPITGWPLEPARPGQYLAVCLDVKDSFGIQRPKYEDPSQIETLDVCRFLFGTQDGQIIQTGEMKISAHEKSKLTAVLTSWLGSAPGAGFDTESLRGKGAMINVVQKVSGKGRTYSDITSITPVMAGMEAQVPQPAQFNIPGGASAPAPQTTTQVTVEQPQMAQPTTVAQTTPVAQPAPVAQPAQAQMFSAPSAPAPF
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