NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209534_10006168

Scaffold Ga0209534_10006168


Overview

Basic Information
Taxon OID3300025880 Open in IMG/M
Scaffold IDGa0209534_10006168 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10464
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016795Metagenome / Metatranscriptome244Y
F031840Metagenome / Metatranscriptome181N
F041775Metagenome / Metatranscriptome159Y
F066686Metagenome / Metatranscriptome126Y
F086721Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209534_1000616810F086721N/AMKIKNLFFLKAENKQIEAWLTIADNDKVSTIRATGVSRKQCIFNLCKQDKLTWDLFAEAKSLALAKQDPRLPKRTFVSRNSVRDQRLADICDDMRCSVAEAVAFLDRGIAPCGW
Ga0209534_1000616811F016795N/AMTNELETFMTEELGIIDRLGTDPLEGLDLFEDVGGKIWNLDQIITAFNDSKK
Ga0209534_1000616819F031840N/AMKTFDDLVFAPHAHAKDLGVQASLTLDNGYAFSVVANTDGGDMFYGNHPNTYEVAVFNQRGDFVPLGKYDDMLGWQAPHQITALMRQFHLDGVLHEKLLVDMRHDFNEKRVAKQAERAGL
Ga0209534_1000616820F041775AGGAMRINNPHHLQVQDLDSLQASELTMAFINDNLIQPMIERDLLDNDQLSMLGVVGGALKVLAQKAHAYERLYENNTDASQLNN
Ga0209534_1000616827F066686N/ALTRSGVSIIVVGIDMHELQEIINDLQARLAIVGGGRIIITSDNVSIRLGEEHEDFEIQENRTDVEMYNQMWGQ
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