Scaffold Ga0209534_10028635

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209534_10028635

Scaffold Ga0209534_10028635

Overview

Basic Information
Taxon OID	3300025880 Open in IMG/M
Scaffold ID	Ga0209534_10028635 Open in IMG/M
Source Dataset Name	Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3884
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (42.86%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Helgoland, sampling site Kabeltonne
Coordinates	Lat. (^o)	54.184167	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010465	Metagenome	303	Y
F054010	Metagenome	140	Y
F054687	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209534_1002863514	F054010	N/A	KKKTPTPTSTSLSDKQLPVIRIVSTEDEMFTKLNLEMEDEVYDMLVKWGKKEATDDDYISVALRCGLEEYVESLKEKP
Ga0209534_100286353	F010465	GAG	MKDILLDPVDMTEELMFHLFNNDMNRTLDGRWLDLYVQLQHYLDFQKNIEREADE
Ga0209534_100286355	F054687	N/A	MTLNNTDPSDLSTLDEPSLQTLIDHYLRVRENLPDNVTVRDRLVELQQELLSRKPVSTIEGVIRQTTDNPIK

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