NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209534_10064381

Scaffold Ga0209534_10064381


Overview

Basic Information
Taxon OID3300025880 Open in IMG/M
Scaffold IDGa0209534_10064381 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2250
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006685Metagenome367N
F010465Metagenome303Y
F054687Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209534_100643813F054687N/AMTKEQVNNTNPEHLETLDEPSLQTLIDHYLSVREKLPDSVRVRDRLVELQQELLNRKPASTIEGMIRQTTENKL
Ga0209534_100643814F010465N/AMKEPILLDPIDQIEELMFHLFNNDMNRTLDGRWLDLYLSLQLYKEHLEKLEEQ
Ga0209534_100643817F006685N/AMTKETRGHVWRMREWGRTAYRNRQAKLRAEGESSKTEASKRMLRVMAPRLGKRVEDFMYTFGGNTEHTTPLFLTFILDMCPYQVAATALQTFLDNLQFNLPVGRLAYKIGKAFENQARWDKALETMHPNKLDLLALDDRSKAMKLKQFYHYEEERFTLWDSKCKVALGSWLLEEIRIETGLWEIGFNTGGQKSYKPERLVLPTAQFKDWIRRFDSWKETTRVFKMALPDRPVDWYGLVGGGYSVKHMPPQKFITGKPVSWFEDYEKSYEHAMSACNKLARVKWKINEEILDITLKCWENERVVGNIPN
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Biomedical Sciences Research Center "Alexander Fleming"
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