Scaffold Ga0208644

Basic Information
Taxon OID	3300025889 Open in IMG/M
Scaffold ID	Ga0208644_1000251 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208644_1000251 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40691
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

40691

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034904	Metagenome / Metatranscriptome	173	N
F042808	Metagenome / Metatranscriptome	157	N
F063494	Metagenome / Metatranscriptome	129	N
F076012	Metagenome	118	Y
F083941	Metagenome / Metatranscriptome	112	N
F105027	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_100025117	F105027	AGGAGG	MSSEVTNTGGAEVTKRTVTIVIEDADGGFHLSLDVQPPLEGDGTQVRPTPALIAGSVARRAIQAMVEGQPQPGGSN
Ga0208644_10002513	F063494	N/A	VIDTPLPSRATLTQMLTQESPKHLSPEATYRFYERLGILAGNKPATPQQLQAAILEANEYDLNSEA
Ga0208644_100025137	F034904	GAG	MRKTLAQAKNSTIPQAVGLATCDDRFVQLLNEAQARLADMGKWWGTYKKLRICVTAGCITWPREVKTIEAMNVCGYNIPIQNQWYEFQTDERAPRTGCGREGCEQDQLLDRGMVTQFRDSVGNCKFRVYPSLTADAGKRILLQGIDPATNEPIRTLDPVSGEYVWGEYVTLPNPAITPFVETSNLFKQPGLNGAQKPLTQGRITIVAYNPTTTLSTQVAVWGPSEENPEYRRTYLINMPEVCGGTAGCNSSQNNCCIDHGDGCVPPEENCTNTVIEAIVRLEFIPAVVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLALRSLRNELEAYSPNERSVINVQPFGSAKIQYRFGGFI
Ga0208644_100025140	F042808	N/A	MVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWVKGLTFDDPDVIYQGGYYNRAVRDSFLNGFFQGCGTYVSDSGAPYLFASISGKVYQIDIQNGFKVTDQTPIGFQFTVLTRGRASNVATYVCSAPHGLSPGMVVRLPEPVGAFFPTGFFGDFVVDSVPSPTTFTTYSPGIDAGPLLGPLFVGYQMLANNPQAPHVYFQQAENWLVVQDTINVPYLYNGATIRRATGEEVPTGGPMAYGKGRLWVANGSEYYGGDLVYGEPAYGRDSVIRFTENTFLAEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDAWKDLSYPIQRFALLNFGSFNHESIVPVNGDLFFRAQDGIRSLIYARRDFTEWGNTPVSRQVVRALAYDTEFYLYAASAVNFDNRMLMTTQPKKVNGRGIVHGGAVVLDFDLVSGMGRKVAPAWEGVWTGVDFFQFLTIRIQNADRCFAFGLNQGDIGLYEVTKNGQFDFDGFDDAPIDWVIETRSLTFAEPANKKRLVSAEQWYDQVMGSIESKVYFKANEGECWQPWAEFKDCAKYRNCEPGEISCPPAVINCQEVKYYQPAARSRIALPQPPDKCDIQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDIYGDLSRVACPLLSA
Ga0208644_100025152	F083941	N/A	NPNNLEVRIVRLETIIGDKDAGMVSDIHGIKATLEGLKQFQWKLFGGLGVLVVLAQLIGRMSLK
Ga0208644_10002516	F076012	AGCAGG	MPSLDKYTPEVSPKSLSRRESRTGTVIAVARATLPAQMVLRLRRVAGDLGDIAQNAAAPAEERIAAARAMVTLQDQLIDLLGIPRRPASAAGKGKASAPILDVSPSAAPPDLG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208644_1000251

Overview

Ecosystem & Geography

Associated Families

Sequences