NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208644_1001600

Scaffold Ga0208644_1001600


Overview

Basic Information
Taxon OID3300025889 Open in IMG/M
Scaffold IDGa0208644_1001600 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18793
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (24.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031036Metagenome / Metatranscriptome183N
F049653Metagenome / Metatranscriptome146N
F095415Metagenome / Metatranscriptome105N
F097238Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208644_100160016F031036N/AMKEDEFVIIFTGGNYAAPYWDAYAQYVSADSGTLENRDCTINAIARLL
Ga0208644_100160022F097238N/AMNYLQYIYDAVSTATTDDVYALAAPQGITTDYIVITVQGVQVEENKDLEPAETINATLFFHYSDADAAQAELAIIRDAIKTDLDYVTATLDGIQFFYDDVNEQVLLAADFIFILKP
Ga0208644_100160023F049653N/AMAGSKVYLRSQSGRVENFDQFRARLRKLGTSDSMRFREVRNLLMKEAQPLVTAARQAAYEDSLAQRSGTTKQRGAGGSAFRNLYSSIGKWKNKGNKKAYVVVGLLSQRKKGAYYAPWQLFGGTAKNFEAKDFIGKAVDNTSVVEKAQTLMQRHLLKRITSILR
Ga0208644_10016005F095415GAGMSQEVNSDLVRTIQQSGCNQMKGDMIRWLGEHPKATALELVKHFCGTIWMGSGTEDGAYKEGQNYNL

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